If I remember correctly, only brush, entity, mesh, and particle files need to be converted from BIN to TXT...everything else (gameplay constants, galaxy scenario def, etc) is already in a nice text format...
Or perhaps you are getting formatting problems from using something like wordpad (which can use tabs and endlines differently, perhaps?)...as Goa said, notepad is a better choice...however, I do believe some people use notepad plus or something like that, mainly because it shows you line numbers...