Yes I experienced that. Here's a screenshot I took. I hit the enemy with a Gravity Warhead shortly after they started charging their Phase Drive and disabled it, but that didn't break the Phase Jump, unlike SoaSE1 as I recall. It looked like they jumped while their drive was disabled, though it seemed like it took longer?

Apologies about the double image - I've not played around with images here before and I'm not sure which image sizes work best - full resolution or 640x360 - Okay full version shrinks to fit, and clicking takes you to the original!