Hello! The team is aware of this issue and actively working to resolve, thank you for sharing these details, any additional related files you can supply like saves attempted are appreciated.

Update: The team believes they have an internal fix that should go out once the update is pushed from Test to Live

I can confirm this on 18 of December. I have always started my games with the Progenitor Mothership and I believe this bug might be related to the Unity Meditation ability because the Unity points from the Progenitor are behaving in unexpected ways:

- If you start with a Progenitor you can't use Unity points before unlocking the first tier of harmony, is this a feature?

- Sometimes the Unity points from Meditation are not recognized right after upgrading the ability.

- The Meditation ability description does not match its current effect, it still says that it grants maximum Focus, which is not the case after the update.

In my particular game I had 2 Progenitors and a Halcyon and around mid game the Unity mechanic just stopped working like "Not usable while crippled". 

Thanks in advance!