After discovering the relevant anomalies I chose to start the mission to build the Baratak grove and Manti Birthing Pools. I initially thought that this would be an indestructible improvement since the citizens traveled to my worlds because I built them. To my surprise I was able to destroy the improvement and the citizens stayed!
Now, as much as I love this exploit it seems as though I should have to suffer at least X number of turns of indestructible improvements. Or if I destroy the improvements the citizens will leave. Just a thought.