I have 3 and sometime 4 computers hooked to my router. The quote from the dev stated if you want to hook to more than 2 you need more licences which is EXACTLY what the OP is entitled to. You should not require a second account for this either.
Am I wrong with the basic math here? OP own's 1 SOASE key, 1 SOASE entrench key, 1 Trinity key. That's it, right?
Therefore, based on the licenses he actually owns, he should be able to play sins of a solar empire and entrenchment on 1 pc and trinity on another. Then, when you talk about the licensing rule where each copy can be installed on a total of 2 pc's, resulting in a total of 4 pc's.
If that's not possible, then there is a problem - though again, it sounds like it would be easily mitigated by creating a new account and having the registration transferred. Whether or not if a user should HAVE to create a new account is a bit moot. If that's what needs to be done based on limitations inherent with impulse as it is today, then I'd... just create a new account.
However, because of several things said in the OP, I'm also led to believe that he's miffed that he isn't receiving multiple keys for his trinity purchase (instead of the 1 he apparently received). That, I find, quite moot. If SD/Ironclad agree decided to repackage sins into a single bundle, arguing that they must have individual keys isn't really all that valid. And entrenchment/diplomacy are not standalone games...